NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10005296

Scaffold Ga0214923_10005296


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10005296 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15088
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010302Metagenome / Metatranscriptome305N
F015434Metagenome / Metatranscriptome254Y
F017131Metagenome242Y
F024955Metagenome203Y
F034574Metagenome / Metatranscriptome174Y
F038086Metagenome166N
F048773Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000529612F017131AGGAGGMAFPGSYNFNYYRGDTAEFVIRPKTANGSAFDLTGFSADFFIATARGETGTQYEAQAVVDAGADTVTCTILPGVGRDLNAGTYVYDVQIDSGASEIYTILTGTITVTDDITGAV
Ga0214923_1000529613F010302GGAGVVDVLLNTEDVVVLGPPETVDVLVDIGPQGTRGTKFIVGSGEPNPQTSSGVLLGQTLILNDMYINTSPGEDYGYLYQYVSQPGGNTWVEVLKISPTIYSAIETVSFASGNGSITIPIANIVTVTGSPLTASNFNVQYQIEGANPIASSLEIPALAGAGTNLVINLHASQYSGGSWSALSGSKTVHLFISIV
Ga0214923_1000529614F024955GAGGMAVENIGDLVPTKIPALIDDANIQDALRAYHYGSYDFDTAETDPEELLNPSIAYTINDLQNQIDDNADLEEAARDISRASTSAPTAAAFTAFSATIPDGYIWLDKDSSAGVGYYAATSVYTTTAPTTNLANGLIWIEKGSNPLTMYVWNADTSAWDEIGA
Ga0214923_1000529615F048773AGGMPTTFDSDGKAAYVYNLADDTWYQVSGKTDISGTFEWTGLHTHLSNFTTAEASVAKKGTNNFLNPAARDAAIPSPIAGTVCLIRQNAGGNTVNEIQVYIGGSWVTVLPSPIGQTNKVLKSDGTISSWADAPDAMTQVILMMGV
Ga0214923_100052962F034574AGGAGMKITYSIWQGSLQKGTLTANSIKDIVKTIDELNSINPPIKFEYLVHKIEQVA
Ga0214923_1000529622F038086AGGAGMATTTISNISNTINIEDIQSTKSLTNIKPFDSTISNIAFGALIAATTLANPSTIVDLKPTISNVVKVDYAKVITPTSVLPFRLTLSNIGIEGYDPANPPGIGIQIIGFSNYIL
Ga0214923_100052964F015434GGAGGMESNYPDSWHRHTPKGMTIINTVNKSKKCCDSCSCNEEQEDFNKLMETQTSFEE
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