NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10005320

Scaffold Ga0214923_10005320


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10005320 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15045
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (71.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F002162Metagenome / Metatranscriptome588Y
F004599Metagenome / Metatranscriptome431N
F007469Metagenome / Metatranscriptome350Y
F037698Metagenome / Metatranscriptome167Y
F105165Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000532010F002162GGAMPNYEYECPGEEIAIVVELPMDHKTPNCQVCGTIMRRVYTAVPAIFEGSGWAGKRG
Ga0214923_1000532011F037698AGGAGMCDSHDQGEHEINWAYQNELHKEWLADNPDAKYIGWMSI
Ga0214923_1000532024F000468AGGMTVWTPDWKLTVAGVDYTDIAISDIIHQSGRDDIYTQPNPSYLQVQLVALSGQTLPFDINDSLSLQVKNSSGSYVNLFGGDITDISVEVERSGNLTAIISYTLLAMGSIVKLAKEIWNDNIAQDEDGEQIYEILSSVLLGSWNEVPAATTWATYDPTETWANAVNLGLGEIDRPGLYTMQHQPNTIDTIYNVVSDIANSAFGYIYEDNEGNIGYADADHRQTYLIANGYVDLSANHAIGSGLRTTVKSADIRNDIYLNYGANYNAQKTSTSSSSIALYGYKAETINSRIHSAADAQEVADRYISLRAFPQPVFDSITFPITNPEIDDSDRDNLLNIFMGMPLNIQDLPDQISDGEFEGYVEGWRWSTRFNELFLTINLSPVSFSQVAMRWNSVPIGERWNTLSNTLTWEYATIVA
Ga0214923_100053206F105165GGAMTVKDDMLQLAWIFMGLGIGAWIIHEIKETAFQNGYWKGRADGWNMHRRMAETKRKSDEIFDYDKN
Ga0214923_100053208F004599N/AMAFNLEDYEDVATLNKWFIANYPMGRSDISVISHDPEKGYVLVQATLWRDSKDSSPAASNIAFGSRETYIPNMKKFYVEDTSTSALGRAILNLKGSDKTATKDDMKKVNNEPNKNIYGKSGNSKIIEMALRKSFANDNKSGDSSGAWSVGEAIQNIPSKPNEQTCIHGLMILKQGTAKTGKPYYGYVCTAAKAEQCDAIWGKLQDNGSWWFPSDVEQGKGGE
Ga0214923_100053209F007469GGAGGMGELQIIDGSGLTATFTDQGVKVEPSTIRCDTCNDDRLLHEGDLLRCYVCHTINRIPYNA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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