NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10006699

Scaffold Ga0214923_10006699


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10006699 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12837
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (52.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003049Metagenome510Y
F005584Metagenome395Y
F006138Metagenome / Metatranscriptome380Y
F019290Metagenome230Y
F030060Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000669914F006138AGGAGMPATTIGQPGLVFGATTEGIGLVQSFSETRNVEKSEIRDRTGDIVGIAYYNATTGYSLSVAVTGAYNVTAGAALAALANATTAVGTGSLRIDSITINKSNDAFVTLDISATGYPNVS
Ga0214923_1000669915F019290N/AMEGHTYWGTTNLKVASAVAAFGAKPRPVDPVTRVIRDGQQQVTFWFISDGNGDIARNEMERTWADMQSDQESPIRYVRAALENRETLLGLVKRAEPIRIIQIGGQTLMVPENASPERKKALLRHI
Ga0214923_100066993F003049AGGAMKNAKQIIGCRKSKKGEDTKGLGIIRFGKSLPDPTKYVKVDITYDEKAGRELYEAGMLTLKHDPEAVIEYAIKKALAEAAKCKK
Ga0214923_100066995F030060N/AMIKGVITSEAPQIHWEHLNVAGGRVLDLGCAFWTQAEREEGNGTAKYFLSQKPEFYMGVDINQGDITTLSQQYPQGKFICEKADSAFQMDAWITENSITHVKCDIEGDEAHLLQIGNVHNLKEIAIELHYSDRWLEEFKDWFKSIGFECYRYDSVSFCSEISVIYGRLKC
Ga0214923_100066998F005584GGTGGVGGLIQTSYFSSDLNYMIIDLWQSVTGLGSNAVSASVTDLAVSSELDVGGDVFRITQSAVVCASMISAPVIGSLCTVSGIERMIAGFSQSTDGLSYTIDLAEITT
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