NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10018966

Scaffold Ga0214923_10018966


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10018966 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6269
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013886Metagenome / Metatranscriptome267N
F090299Metagenome / Metatranscriptome108N
F101154Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1001896610F013886N/AMVSDNFVVNVLKNMNNTIEKPNAFAFKAKVGESKEIQLCICIRENDKWLENEIFSVPEGHPELSPYIDEQLFNIVFIGYERDESGEGFWIKHQNSFYMKSDTILTEDLLNNGEFFTTIEKGYQSFYEQSITSEREGEQTSTSEQENL
Ga0214923_100189664F101154AGAAGMRKSKVDKIKLLNEEHDLEVTSDIINAYRTNTTRKRITKKGLEKYYNNLIQFMNNRFI
Ga0214923_100189669F090299AGGMKKVIVSKVEYEFLVSLLEELYIISPDETISDKWISKLEPTKKLFDLELEFYNIRNDNQSPTKKQMVKWLLTKIKNKSLDL
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