NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10053103

Scaffold Ga0214923_10053103


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10053103 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3068
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005167Metagenome / Metatranscriptome410Y
F019092Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100531033F019092AGGAGMSNVPLLGQKPTADEPMFRLLYCLVCDKLEELPPYDGDPELDHLLTIACEAHVFPSGEPHKGKLFVLPLRAWAKSESKKEIIRQIKGGGSKGLAEIDDTFYDSRSIFLEDAMSCYVKHNKPKEGCPDWQDKSKLLIPNTVKERKAEGMARYQDEAGPKTYLCNFCPVSIAVNQRKQKLIEGIR
Ga0214923_100531038F005167AGAAGGMTVNSSRSMNAGLNEGTTDGKYRKARPDTEVTPGLGDEATIDNRQSLNPFYGYGFLTSEYPAKVNPGK
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Institute for Fundamental Biomedical Research
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