NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10406881

Scaffold Ga0214923_10406881


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10406881 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)696
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F010397Metagenome / Metatranscriptome304Y
F103125Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_104068811F010397AGGAMNPNEFERTKPTITMKKINDLIYRIEEERVKTEILYKDRVRSLEEINSLLLD
Ga0214923_104068812F001840N/AMKDQDSIFLICDCYEHGLLVEKFKDENEVSISLFERGLNGRTLCWSERLRWCWQIIRYGKPWSDFIILSEENQKQLKDFLNK
Ga0214923_104068813F103125N/ADTNETYDYWIEYDVTFVDGKVTGAKLLEFTATDNSERKEQHRKDVEYWTNRQKFEYTLFYRLIGKPYNKTISFICRTIHKSATWITYKIWNVERFLKI
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Institute for Fundamental Biomedical Research
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