NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255768_10159895

Scaffold Ga0255768_10159895


Overview

Basic Information
Taxon OID3300023180 Open in IMG/M
Scaffold IDGa0255768_10159895 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1413
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005132Metagenome / Metatranscriptome411Y
F006007Metagenome / Metatranscriptome384Y

Sequences

Protein IDFamilyRBSSequence
Ga0255768_101598952F005132AGAAGMVDVIFIDDNYLYQNFPLPKRMDRGSLLAIIQLEQFTSIQDLLGSCLYEDLEAKVLAQSLDSTEQDLFKLVKYTLAMYSAKAAISILRTETARTKNEEGKQDQYILDTISSTIESKLSYINKRITKFILENTAIKNIATADGCDNDLFDEEDTYQGSVFYPKDGITDQTCEDGGVSYNL
Ga0255768_101598953F006007N/AFIGRNMSAEQKREEYNKFKESFTGAEADNFIVSWVKKEEDAPKFTPLDIANLDKTVDVLSRLNDAKILTAHNVTSPTLFGVMVSGKLGGTGNELVTAYQIFRATETLPNREVLLDAVNRILGTVGYDQMNLGVVEEDINLESIKGANTEDINNG

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