Scaffold Ga0255768_10159895

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255768_10159895

Scaffold Ga0255768_10159895

Overview

Basic Information
Taxon OID	3300023180 Open in IMG/M
Scaffold ID	Ga0255768_10159895 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1413
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005132	Metagenome / Metatranscriptome	411	Y
F006007	Metagenome / Metatranscriptome	384	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255768_101598952	F005132	AGAAG	MVDVIFIDDNYLYQNFPLPKRMDRGSLLAIIQLEQFTSIQDLLGSCLYEDLEAKVLAQSLDSTEQDLFKLVKYTLAMYSAKAAISILRTETARTKNEEGKQDQYILDTISSTIESKLSYINKRITKFILENTAIKNIATADGCDNDLFDEEDTYQGSVFYPKDGITDQTCEDGGVSYNL
Ga0255768_101598953	F006007	N/A	FIGRNMSAEQKREEYNKFKESFTGAEADNFIVSWVKKEEDAPKFTPLDIANLDKTVDVLSRLNDAKILTAHNVTSPTLFGVMVSGKLGGTGNELVTAYQIFRATETLPNREVLLDAVNRILGTVGYDQMNLGVVEEDINLESIKGANTEDINNG

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