NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10000079

Scaffold Ga0214919_10000079


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10000079 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)148133
Total Scaffold Genes218 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)136 (62.39%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Associated Families14

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002267Metagenome / Metatranscriptome576Y
F002869Metagenome / Metatranscriptome524Y
F014734Metagenome / Metatranscriptome260Y
F021295Metagenome219N
F023035Metagenome211Y
F027175Metagenome / Metatranscriptome195N
F046897Metagenome150Y
F047670Metagenome149Y
F050978Metagenome144Y
F051079Metagenome144N
F051887Metagenome / Metatranscriptome143Y
F066722Metagenome126Y
F070997Metagenome122N
F091591Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_10000079104F066722N/AMEQEIMQAWQVLDDIKMLSAREGTEKEDWDAVYRLYQIRFETLFETFEQLIKAGTIL
Ga0214919_10000079109F002869GGAGMSNEITTEMLDRKIAWCEQNAFWGRGSAIQRMQDFYFEKTRDTVNEPWPESFTLDDLAKALNVERVSYRIYYSRDNLTLRLFVFRAHCTESEEQKMLALGFVHAKDGDTENIPNKELVE
Ga0214919_10000079113F050978N/AMHCCLDCAMETVDYVRLNCGSQQALAYKHQLDIDGLIVNQDYTWRYQKPVYDEFAWTDSEVSNVTFTFRNPMLATFYQLKWCR
Ga0214919_10000079117F051079N/AMNLLYNSGIVLQRIEMNDWDRNNLHFILDSDEATLEDFYSWATEDDLAYALSLVREAKTELLLQEADILDEMLIAATEDDVSEASAMLKQFQL
Ga0214919_10000079130F047670AGGAGMKIRNEYLWLVLLVAVIAGGPLLSIWALNTLFPVLAIPYTLETWAAMALVGGVFQSLKIGKKD
Ga0214919_10000079134F021295GAGMLEFEDDPIYEYAKTVMFQIMTVLYMNGRTEAHVGAIMRLLGVDEDHARLHDDERIELDENFARMAAELNMNELVSAQVPQGTTIH
Ga0214919_10000079146F051887GGAGMTYHYYGVKGDFAWKLAVDNKLRSTNINHVPRLMRESDQVWCQGPRGGVQLIKGAYWNYWATYLRRDSEKMKQFTWVKLRARALKQS
Ga0214919_10000079199F014734GGAGMAEESAKGAFIEKLLFALLPLIIAGVGYLLNSVAQLNHQVTILESKVSLVVTQDNKQASNTGSELAREKLRQDLTEAIQKNRDSIQENKQMIAVHEERIRRLEKAGAK
Ga0214919_10000079202F023035AGGMNPVTKTLLLILSTILAVFAVPAVLIVFHVYLNAFFAITLFIACFVLFGYYTFQEIYPEIQRKHLEEEAIFHQFHGDKDKIRYYKGFKKHFDGELDLEQLEQWFERHPRKH
Ga0214919_1000007921F027175N/AMTRDQKLERFAERELKRVYTELIIDDEHGGYVAFGRYHLCPESAGFAVYHSDDLVSMFSSKKTAMSWCVADHLQQYRLAQNIRILDNKKQTLTADIHCRSGQADRSNRPEFREMVRTKLAPKIENLTLLNQELEKCLNSAKYLQLRGFAK
Ga0214919_1000007923F046897GAGMRIDEVENSSSLDPNKLMGLVNFLSGRADDENAQKQISTDAFISAAQSLGFPVNQRNIISVVSTPPLDSVLEPIDPSNPSVIMYKGANTGATQMPVNKAQDIVAASAKSAAGKERGV
Ga0214919_1000007936F070997AGGAMSVEIGKTYTMRMGYGEEIVAKITGFNSSTYTLSKPVAVVPGQQGIQLMNSLFTADPEAEVTVNISSVAMIAPVREDVGDSYLEATTGIKPVRSKILMG
Ga0214919_1000007966F002267AGGAGMSGIMQSAISNWRPAVSSAPTLVYDLDAANYAAVPTTGSTVAGTGAYTITVANAGSRLGWSATNGGIFTFTGSGTSTTDTMYGGPNYVTSQSYSVFMAYQRTNVANGRLLNTQSEASKDWLMGLYNGNPDTFYPNVSVNLPGSGADLIWHFGWATWNTTTSLGQLYTATNTQPSAVAFSTTNAGGGGFNQLRMFSRSAGSEVQTGNIGFIKVYNGVLDLTTVQSLYATYKTRFGY
Ga0214919_1000007994F091591AGGAGMRTKTVFHGLKNSQKVRVIFKGDGSENDIGMYLTVKQITEQFATVNARSLCFDAMYELVQMRFLAETGKQPVPTGLGTTIRGKQIQVDLI
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