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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023184 Open in IMG/M |
| Scaffold ID | Ga0214919_10000121 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 124183 |
| Total Scaffold Genes | 166 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 98 (59.04%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001957 | Metagenome / Metatranscriptome | 611 | Y |
| F016374 | Metagenome / Metatranscriptome | 247 | Y |
| F030663 | Metagenome / Metatranscriptome | 184 | Y |
| F044299 | Metagenome | 154 | Y |
| F044967 | Metagenome | 153 | N |
| F046245 | Metagenome / Metatranscriptome | 151 | Y |
| F051684 | Metagenome | 143 | N |
| F053886 | Metagenome | 140 | Y |
| F064343 | Metagenome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214919_10000121101 | F046245 | AGAAG | MWAYIITFFAVFATDLIYVYFVKSIQDNRPLMAAWWSMAVTFTASVAVINYTEDHWALIPALAGAYCGTLFGMWIKKKFGV |
| Ga0214919_10000121119 | F053886 | GGA | MSRTLIWVLSFSVLGPVPEYGEQAKFKTQAECEQARVQKREEFRAQNKQIVATCNQSTK |
| Ga0214919_10000121133 | F016374 | AGG | MNKEITLTPEGGRFYRAMSFHWVTVAVVMPPLAIAMIAAILNPFWFRDSMFNFVERQINQFTRWRNNVKYRIYLGCDPVVWHTLRGDLK |
| Ga0214919_10000121134 | F030663 | AGGA | MYELIFTFLVTTQAGIPGFHIERMSQFRELEDCEKTRTSMIVYMDRLVRENKMFPGVFECRKVQR |
| Ga0214919_10000121135 | F044299 | GGA | MNQVSQYLVSIDRPPYVNGRRVGQARPCQSYGRPAWSISFYDGYTIASKPVFTDEDGLNGAPTIREYATNLGYEPCTN |
| Ga0214919_1000012147 | F064343 | AGG | MQDITVNDYLTWEYSTDPDIQYLNCPAPTSMHNHIPEWFKNQKARKQEINIADQQTIRNCLGFRGLATLGYTIPLPEELTGHDTYFSRGRLHPEMLYGTQWANQGSEPWTTDDTSLYEYRIRLLYWPWRARMSPGWRLLILPYLLDWSNDWNEFAGIVEPNYEVNFGNSIGVGLKWTQPIDHNYNYYNLETVMAYKRSVTVTKGTVTFCAVPLYDPELAEKQL |
| Ga0214919_1000012165 | F001957 | AGGAG | MNSVDMATNLIFRAKHLQEFTVTTELPDDFGFRGVIPFDMQITGNILEARVWAIDFDEAVDRLNEFLQNTD |
| Ga0214919_1000012167 | F051684 | AGGA | MKFYAWFVKHQDVISGFVSGIALMSAADYFARGDMTYGCLSLFVSVANLLLSGKKIGQHGQPN |
| Ga0214919_1000012169 | F044967 | GGAGG | MEIEMIEKTKDRFDLEQEILQCWNITDDIKHYVAESATSEEFAALAQYYERKFDRLWNTFESMIHERKM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |