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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023184 Open in IMG/M |
| Scaffold ID | Ga0214919_10000853 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 51778 |
| Total Scaffold Genes | 108 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (12.96%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015599 | Metagenome / Metatranscriptome | 253 | Y |
| F038242 | Metagenome | 166 | N |
| F042325 | Metagenome | 158 | Y |
| F048996 | Metagenome | 147 | Y |
| F049619 | Metagenome / Metatranscriptome | 146 | Y |
| F059964 | Metagenome / Metatranscriptome | 133 | Y |
| F074879 | Metagenome | 119 | Y |
| F090389 | Metagenome | 108 | Y |
| F097324 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214919_1000085313 | F059964 | N/A | MTNEFTDVAYNTARNARPVYINMAATKMSNSVNPNSIVIFKDFMGRTHKVVCRNKPEIKKACEFFSMLKKESAQITRIISDYPMSYGQIDKKFIPSVKRELKGMGLSSKQIENILIMYWA |
| Ga0214919_1000085314 | F090389 | N/A | MNIKQFKRHHAIRVMNWCKVNVGLNYRRKYLPELEWHSTGEDCGDYDFEDNIISVYKNKHTSVVEIISTIIHEWVHYKQSTKKYYEYDTIYNYCDNPLEIQANELADKMKWKCKKDLFR |
| Ga0214919_1000085318 | F074879 | N/A | MNVSINDIKEIEHQLSITLTDAQRDKILNEYNTIIGDRAESWDELIELLIVKQSLIGVLKDKNK |
| Ga0214919_1000085328 | F042325 | AGG | MLTIENIQKIEGNKIHTPHAHWVVMSIEERKHDYIIKVRFDYGTTFGVKNPKYVNFKLLRYNEFSSTLNEWKMYNDQDNRYTTLTKGLLNFKMFVGILGGQLHNFSK |
| Ga0214919_1000085329 | F049619 | N/A | MLTIENHIKLTFRQLGKKNFYVESIIESLVSDPITLKREGSYKITITNRKYAITITLDREPAQHNTLGTYFTLHSSKGHKLYISKDEISNMDIFIDKLRLVGLG |
| Ga0214919_1000085332 | F038242 | N/A | MLTIKNIKELELNFCHQRGLREITETQNKLSEQFYSFHFGPISDGKGYNKEIEVRLGRDVNRGEYQIFVMGLHLATRSFVTIDDVKTKDGLASEICKILAKAEHWWKTEATK |
| Ga0214919_1000085376 | F048996 | AGGA | MLTIQNIKKLVGTYIEKWEVMGAKVDYKRTSQSPDHSYTIRLSRRDKTSVGAAIIIEREAGEFGYNVSVCYEDYDNVISINAVGETELKNKDGFLSLMRGILDAEYDKND |
| Ga0214919_1000085381 | F015599 | N/A | MKLTIKNFEKLFRKEWDDKNYIEDIDERRDDYRINVWRGHMRHFIILDRRPVENGYYTIGKWSNEAMCVRYPYWIKHEDIMNIDTLMEKLKLLTDDWTPKLL |
| Ga0214919_1000085392 | F097324 | N/A | MSRTKNYIATIPMKNEDQVIEVKKVLEQIFGWVVLKGRHSDRKSVVTNWSVGKQNDVPWILAEYIDIYLHPKNPNYNSTKGIHRQNMAYNEVSVVNARILGNMKLGLADGHYNKMQTKNSAIYQSIMNIHYRTARKAVVTNTPKVHPHSKKPYGTITKQIWQFLNNRMDATYTELKTYYDVVIRGNAIMINGGSFIHHLQSLRNPSKKRGWYLAKQLNGKYALRVS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |