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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023184 Open in IMG/M |
| Scaffold ID | Ga0214919_10003308 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24481 |
| Total Scaffold Genes | 65 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 56 (86.15%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008554 | Metagenome | 331 | Y |
| F017266 | Metagenome | 241 | Y |
| F019830 | Metagenome | 227 | Y |
| F023104 | Metagenome | 211 | Y |
| F034176 | Metagenome / Metatranscriptome | 175 | Y |
| F045555 | Metagenome / Metatranscriptome | 152 | Y |
| F073563 | Metagenome / Metatranscriptome | 120 | Y |
| F077307 | Metagenome / Metatranscriptome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214919_1000330826 | F077307 | GGAG | MKAYKTSIKEVFSNDTNSPFWQRLRANPGYTKFEDDLAHIMEESLKHNMPYNQIPRDKIGEKL |
| Ga0214919_1000330835 | F023104 | GGA | MNIVNIRIELKNPFDTWDYFNNFGCVSGVLFAHKAWELEHSYYSPLLFDFEVRWTRGQDHAGIEIGAGILGYGISFRIYDTRHWNHMENCWETHEHSETNG |
| Ga0214919_1000330838 | F019830 | AGGA | MAKRIGPIELDGETADKITYLNLKDYRAYLKNELAAWRKNPRTEDNPDGQWLHPEDVSGNIMRIEALNLIIKDFTYDN |
| Ga0214919_1000330842 | F017266 | AGG | MTKLAKSELIHSRGMGKSYVNDLLVNYYANMMHTLLKIKWQRLPGLKLQAYVDDIRPENRPGRGLCETDMDPVQAWSEQCCCGTRMSFNVWLFKNEKQITMFLIKWS |
| Ga0214919_1000330844 | F034176 | AGGTGG | MKHNYVKHRDNVGDLEYFISKFECRVEDSRVYNQYTRQAPSYHRDFYDSDRSKMQTEIVPMKAIHLTRDNLARLVAEQEHMQRLNDEAKFGNRLWAQSREDSRVRDSNPAVEKAYQKYVMLLELARK |
| Ga0214919_1000330845 | F008554 | GGAG | MTLEEEMIEKASNAMAREIDREMLWSILQGIGWHRVMIPRFVDNNHAVDITYWLEATCNKAYERNGRDFLFEDSKDANWFALRWGTV |
| Ga0214919_1000330852 | F073563 | GGAG | MEPRHLYTVRWSQPYATYRMRPYLRQLRNDYEKIIEAQLERKHWPEAHQVIERIMKL |
| Ga0214919_100033088 | F045555 | AGGA | MTSIFIVRAEYRGAPESIIYGVYPTVELALARIAVLEGEDFGYEITWYDEVKVGPEGADCVLANR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |