NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10004700

Scaffold Ga0214919_10004700


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10004700 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19801
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (12.90%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F006463Metagenome / Metatranscriptome372N
F007860Metagenome / Metatranscriptome343Y
F009004Metagenome / Metatranscriptome324Y
F009958Metagenome / Metatranscriptome310Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000470011F007860GGAGMKSNYLAGIYFIAGFLTSFSLICQGTELYINLAGVTLFFYLTFSLTEALEDLGL
Ga0214919_100047003F006463N/AMKSGTIYEQLDWWQRQWRGSFDLHLYLEICRIKKNENQKFKPMKRFKATFKTWAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEK
Ga0214919_100047004F009958N/AMKNRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDYDEVSEYAFIELDVEVSEKWETETDDNLQPHVLGVRILEDLRLEMQEAINSDLQHYNFWEWKASNDESNYNFYHEL
Ga0214919_100047005F009004AGGLVTHINLKTMKTEFNKIIDFLETQQQEDKLNTNQLHLIIQTLATFLDDEQLQEVENLFNQFKK
Ga0214919_100047008F001808N/AMGKLFIVIISILLYSCSAQYHLNKAIKKGFKCDETGDTIRITTLDSIPVIVNDTIVWEKFISTKDTVIQYKNVYVPKTRIQLKREYKIKIKTIYKDKVVEKAQARAEGKKNQPKGNLNLLFVGVGIGLLLSWLWKNGIKSVI
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