NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10004708

Scaffold Ga0214919_10004708


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10004708 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19779
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (41.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043397Metagenome156N
F064666Metagenome128Y
F100408Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000470824F043397AGGAGMPRYSVYIPFTCSYEGEIADEEFDINVEAGNEKDAIQKAIEELHNEYVVKTINSDDITVEKIPDFPSFDEWEEKYTARNNPFAQEGEQGLGEIMFDTDGDEFQTVRGYDAGKIWTVRSTEYGLMLTAGLGMVDRFGYILSEESITEEDWSKAFIID
Ga0214919_1000470841F064666N/AMEPTVWIYFSKTGTGYELKGTDIISGFDAFLNTPGTYLIEYSFAEIKEEMYFFIYEWDNSQKKRRTVYERNQRQN
Ga0214919_100047088F100408N/AMGLKIKYFQCQDWEAYEEEFKIRKYHEYPINRDNYIHVADFEFETAIGAEQCLWELVYLFGTEDWYTNPKIKVHVMTPVRHIQKTDVFTLVSFGQYSFGIKRNEDMMGMAFPFDYFQDSSFD
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