NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10005984

Scaffold Ga0214919_10005984


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10005984 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16919
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (62.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008814Metagenome / Metatranscriptome327Y
F011394Metagenome / Metatranscriptome291Y
F040629Metagenome / Metatranscriptome161Y
F060917Metagenome / Metatranscriptome132Y
F072349Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000598427F008814GAGMDNKLTVLEEIIKEIGEELYQKWYNALALEDRTEEASQAMSSNAGQTTIWVIQKFMNKFNNAAEELKGNK
Ga0214919_1000598433F072349AGGAMEEIVLCYSCNKPKNKVSVKKSTILAINLLLCSTCNENKIEPRWAVILAGRQYGAEHVKDFIAKKRYNGDEITASELLI
Ga0214919_1000598435F011394GGAGMIYLGKDKDHFKYGVNEWTGEPNKPTFYNIEMAKKIRELKKPANDLKMDIVKYPDFLAIRLYEDNFARYDGTLKARVIEYVEMVKNILESYGVRVELEGKPGGG
Ga0214919_1000598440F040629N/AMNKYSINLEIKVEVEAFNLEDAKEYINDIFNIDDEIKSVSILKIKDISK
Ga0214919_100059847F060917AGGTGGMIDWLVNKIFGWDTLKNAVFDEVHMYNHLDSIMKDPDGMETASLSWMEGEIWYGWTYNKNKARYYFDDIGNKSLIGLWEDQWLKEADEDE
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