NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10006830

Scaffold Ga0214919_10006830


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10006830 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15560
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F058557Metagenome / Metatranscriptome135Y
F078706Metagenome116N
F083714Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000683015F078706AGGAMSKLGNALGKKYEENRLSVLTRQFELGGHTFKVRVPAVNEIEAIYNYFKSPNEDVVDEIYQDMIKDFKDDKDDGIEVKDNDILIEGRSMREAARNKHVLQYRITEYIKFLVPETGSLEDLTYADVEIEFPLAIQLTLVEKINEVIAPDYKEIRSK
Ga0214919_1000683016F083714N/AMVFNGHTIQDIDALDEATMNDIMVMYADGLIGNKSLLVNQGMLVTGVFNYLRGNNSQPYTLKGVLGSVYDYVYNEVKADASDSLLRFISQAPDFKMDRFESK
Ga0214919_1000683018F000934AGTAGMASLTTILINSESVSINDHRFIGQVLSRNQRIATSEILTVQPFQFEMKPMNYLLYSQSRQLLSVLRTNDRQLEQYLNFGATGWLNYIAYQGDMTSAQIGACQFQTSSANKTIVLGSLPSIASTAYIVKTGDFLQINRYAYIATADVLRGSGSTVSIPVHRTILTTLTSPMSAVIGQYGTTQSLGGETYIGTTFPVILQDYPTYTLVPMTNDSFIAWNGTFKAFEAVL
Ga0214919_1000683019F002085AGCAGMNIITPIQNTNNIRMADFVRVTTASAVYRFATTPTALTIPAVDSQPFDALGSLVKINDVQRDIKSTANETSVTLVGIDTALLGWVLGHDIKGSKIEMWHGFFNTNNELITTGGTGGLYKFFTGYISTFQISEQWMEDVRQYVGTISVSASSIQIILQNRNAGRYTNNNAWTFFNPTDTSMNRVNFIETINYDFGKTG
Ga0214919_100068309F058557N/AMAIKRYENVDVNTLTFGTDAYGQYTTTITKKFTTRPLVSDVKNSLAITERYRIYQDLIQFTMNYTPWMKDIVDNQNLYSITWRSKDWRITDVLESNDRMSVTLMCYRSDPATKV
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