NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10012082

Scaffold Ga0214919_10012082


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10012082 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10678
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004231Metagenome447Y
F014365Metagenome263Y
F015570Metagenome253Y
F020664Metagenome222Y
F029673Metagenome187N
F032957Metagenome178Y
F047564Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1001208210F004231AGGAGMSVKPKDFQHEICVYLEGIGECLVCFDILTPGEELDADHSDDYEIDFAVFDEQDKHITYDIDRKQYNHCENKAMDEMRDITTQWHKEWETCFD
Ga0214919_1001208215F047564N/AMTQTESLTESEKATQCPWLSQLKPYSSQETFLEYLTQHYALMAMNPKTIEIARYRTKELKADFPTLGILIAQRIKELKNAMPKVSI
Ga0214919_1001208218F020664AGGMQGHLFKLTESERHIIKTIGKGNYAEGVRICIMWGAHFYNLGLNTEMDIRHIGLVTVSSTDNYPHE
Ga0214919_1001208220F014365GAGGMKTFQIFKNVSYEYFVDAETLEDAQNKIIEENPEPESEELIEWVFADEHNGVNWTYEPVTNS
Ga0214919_100120825F032957AGGAGMDDFTPTTRCFSRSLREAYPKDYVNENIIEGPFYSAPNIHDIPVLFALIAVLGMIAVSIWRYF
Ga0214919_100120828F015570GAGGMNEELDRAFDELEFDVTDEIRKSKYLAEQKEIACGVTDGTIQRALVRDLTENLRSLPVSNDPLLIRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS
Ga0214919_100120829F029673GGAGLTKAEMITHLRMAACNENTVTGMSNAFDLGQEHERDVIASIIFNMVKDQHLAQNIVDTMRVRE
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