NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10018658

Scaffold Ga0214919_10018658


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10018658 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7883
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F009135Metagenome / Metatranscriptome322Y
F010081Metagenome / Metatranscriptome308Y
F013524Metagenome / Metatranscriptome270Y
F019476Metagenome / Metatranscriptome229N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1001865813F009135N/AMNKPKYYLAINLPPNFDEVDADAIKTDLMAYINSKNQYGAMYGPKSSKKGITIDKVIYRTNED
Ga0214919_1001865814F013524N/AMKTNKIVIDRLREFTQNNCNTTLDPKLCEDIRYLCDEVERFSHEIVKANNFMDEDHITIQRYKNKLSKYESI
Ga0214919_1001865816F007859GAGMKKLLIIALLCTGCTSGMLLRYSYNRALETLPPCSRVHAINNNYITYSMVENSTNSVYVVYTNYYRAYYNCDGKIIKTTKN
Ga0214919_1001865817F010081N/AMQDQIDSIIKKHCLKMQDVNKNKSIPMIVKELDGIVYDMYRELYGLRDIRASNYNLNSFTADDKKGHCC
Ga0214919_100186589F019476N/AMKFRDFRMSQTLIVKVMNNKTKSARIILDIEWEAVDDSDLPSLWDWKRIKMPMDLTKVKYIGIQQPNGPENVTNWMGN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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