NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10024771

Scaffold Ga0214919_10024771


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10024771 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6502
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006018Metagenome / Metatranscriptome383Y
F014838Metagenome / Metatranscriptome259Y
F020529Metagenome / Metatranscriptome223Y
F022636Metagenome / Metatranscriptome213N
F041152Metagenome / Metatranscriptome160N
F072270Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1002477111F006018N/AMKKYSIKTNDIGMCMSVGCDFYQTCSHNSVNMFYKTKRKFDPMLDESVCLSYSSGKNSKDYPDNCYPNVLKKIYEYQS
Ga0214919_1002477112F072270AGAAGMNINLDLKFVELPQEPYKVPMKLEKTTLNLFLKHLPTASMLEYLIELLPKCTENGPWIAGGSLHRTYRKIPLTNADVDVFFKNKEQFEKFVYDLSVSSITAGYNIESTIYSEWHCTITIKYMDVDWKIQCVTFKYFDNIEELFKSFDINVCRIAYDGNNVIYEDGVLNQINNNKLKFNEGSIYYPSVTLKRLVKYVKMGYDVEDVDLKLLTHAFYKSKKKAIDILDQDLATKKPIDTYEGLK
Ga0214919_100247715F014838N/AMKESLKKIEELKNQLNTVKSELKNEFKAELKKIFVANPTLDSIEMYLNNHEFNDGDATSFYIGYEDMNLIIDGEEVEREWDNATKEYKPNPLLESLIELFGDVHCIHEDLYGDGYEHLSITREELLKF
Ga0214919_100247716F022636N/AMSTYRRATLQDLAKIGYVPNTEKYYKHMAFAKKYYPPEATTMVIVVHSEYNDSTYDNSFQYIIVYDKDGNELPPLKKTAKECRENWNIDNLPIPNTSHGHYGASESDEPLEDVVIPLTIDVPEFYIKEN
Ga0214919_100247717F020529AGGAGMFSNYNIWKYCAKYFVLLTVGAYVFNTSVIFINQKSDVANLIGSALFAGLFIGSLLILKSDVTKLVKNLNENKEKKQNEE
Ga0214919_100247719F041152AGGAMNIVDYIVKNWDTLPKSCFDEDRIVIFKEIENWDGDYGHHSYEGVGVDKDGNVTWCYSSGCSCSGGPSLETKKDLKVFVVNDGIDLNVDPSTINFGSLQVEFNSY
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