Basic Information | |
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Taxon OID | 3300023184 Open in IMG/M |
Scaffold ID | Ga0214919_10027805 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6007 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002245 | Metagenome / Metatranscriptome | 578 | Y |
F004051 | Metagenome / Metatranscriptome | 455 | Y |
F017829 | Metagenome / Metatranscriptome | 238 | Y |
F020168 | Metagenome / Metatranscriptome | 225 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214919_1002780510 | F004051 | GAGG | MTIEGKLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPTRETRWTSVSAKTLLGA |
Ga0214919_1002780512 | F002245 | AGG | MSNLMKVPHTVEFEAVIDLDKIPANLLPALIALDTYSVTKMCKEATLHALGMSNVLPLANENNTWAEVTIKENN |
Ga0214919_1002780513 | F020168 | GAG | MYDILGSLIGIILICLLCSPIVLAIYMWTHAESDIDNDGKKDLPNRWDR |
Ga0214919_100278058 | F017829 | AGG | MANRFRVEIYDADKNNDITIYSDQGVDKEYLTELVFSNIKNFSGKINAYVFDNVKKKKTTAMFLDESTVEFNKNIIRNATKVELGS |
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