NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10037995

Scaffold Ga0214919_10037995


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10037995 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4846
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F009135Metagenome / Metatranscriptome322Y
F010081Metagenome / Metatranscriptome308Y
F013524Metagenome / Metatranscriptome270Y
F042296Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1003799510F042296N/AMNLFKNIVKWTGVLVYAAFLATVAYAATLPDPIKVYLIISSRGGEYTIEKIYLKKENAEKYRDMFKDSHNYSVEERELSE
Ga0214919_1003799511F013524N/AMKTNKEVVSRLREFTNNNCNTTLDPKLCEDIRYLCDEVERFSREMVRVNDHMDADHITIQRYKKKLEKCQLKLSNYEPF
Ga0214919_1003799512F009135AGGMTTNKPKYYLTVNLPPNFDEVDVDAIKADLMAYINSKNQYGAMYGPKSHKKGITVDKVIYRTNED
Ga0214919_100379957F010081N/AMQDKIDTIIKDYTEKMKCTDNTKSIPMIVKELDHIVYAMYRELYGLRDIRHSNYNLNSFTADDKKGHCC
Ga0214919_100379958F007859N/AMNKLLIIAFLSTGCTSGMLLRYSYNKALETLPPCSRVHAINNNYITYSMIENSTNNVYTVYTNYYRAYYNCDGKIIKTTPNN
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Institute for Fundamental Biomedical Research
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