NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10152710

Scaffold Ga0214919_10152710


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10152710 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1829
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020529Metagenome / Metatranscriptome223Y
F022636Metagenome / Metatranscriptome213N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_101527103F020529N/AMFSNKNIVKYCAKYFVLTTLGAYIFNLSASMINQKSDVANLIGSTLFAGLFVGTLLILKSDVTKLVKNINKTENKENE
Ga0214919_101527104F022636N/AMSTYRRATLQDLAKLGYVPNTQKYSEHIEFVRKYYPPEATTMVMVVHSEYNDSTYDNSFQYIIVYDMEGNELPPLKKTAKECREHWTTEYLPIPNTHHGHYGASESDEPLEDVVIPLTSEVPELYIKES
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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