Scaffold Ga0233424

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0233424_10019679

Overview

Basic Information
Taxon OID	3300023208 Open in IMG/M
Scaffold ID	Ga0233424_10019679 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Towuti, South Sulawesi, Indonesia - Watercolumn_Towuti2014_125_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	3422
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Indonesia: South Sulawesi
Coordinates	Lat. (^o)	-2.7	Long. (^o)	121.4042	Alt. (m)	Depth (m)	125
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067540	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233424_1001967910	F067540	N/A	MDNLTLYLAEIKSELQELYEDLNNELQQTENQALIDDSYNNITSKLETALVEIEILITDINNGIYDNNDMYMLDDE

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