Scaffold Ga0255842_1198776

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255842_1198776

Scaffold Ga0255842_1198776

Overview

Basic Information
Taxon OID	3300023211 Open in IMG/M
Scaffold ID	Ga0255842_1198776 Open in IMG/M
Source Dataset Name	Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? CA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Argonne National Laboratory
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	1555
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source)

Source Dataset Sampling Location
Location Name	Fort Collins, Colorado, USA
Coordinates	Lat. (^o)	40.585258	Long. (^o)	-105.084419	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023181	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255842_11987763	F023181	N/A	LSRIYPQNRTFLRLFIDAGGMIRASVYHLHPRGAVVSLLQLVQLFPRHLRVVELVSEVHGSFLVTSNTHGVDRLEPPPEAKVERLPLSTPLGEIVARHEARITEAVKRNPERAPVTFESLDEVLASMARAHLAMARHRQKVGGLSRDELERLKGRPLSETEEQFLREVQGTEKPEPSSS

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