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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023231 Open in IMG/M |
| Scaffold ID | Ga0222689_1003996 Open in IMG/M |
| Source Dataset Name | Saline water microbial communities from Ace Lake, Antarctica - #1231 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2330 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Ace Lake | |||||||
| Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016994 | Metagenome / Metatranscriptome | 243 | N |
| F022908 | Metagenome / Metatranscriptome | 212 | Y |
| F025320 | Metagenome / Metatranscriptome | 202 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222689_10039961 | F016994 | AGGAGG | MATENNTTFVAATGSLLGKELEFITIDAGEELANHLLKNETANAIENTVRQYGNIVGAGPLFDTNASKTYIVEGTDMFVGAPASSGGSFTFTESGADGSSVGTLLAALKALGTVDGIDLNDSGTTAKIENLEL |
| Ga0222689_10039963 | F025320 | AGGAG | MTTKVNPTKLNTTDHLSGKTITAVTVDFAVNGTDFSDTEMGPLGAVQAALATMTQEATPIIITKLRSDGSNDGQVFDMVFEGEFGTDTYDGSNSEAFAAYLQTVIRLLTSVGAGSVNLNAATVVAATAASF |
| Ga0222689_10039964 | F022908 | N/A | MPSHLDEAIKIITSPDSQLRDETPRIYAMPKDEHMPKGFTNLKRMRYLSHDVCGGRNIKRWLWRDYSPELILQQPPFDRYEDQSEVFTLIRDPEERWWSGIKDMFYFMPWYGWWANDKIMAQWPHFGRGTLRYHDIMEQIKPQHLIKCDDGLNDRIIKFAKDNGLLCFGNIPHEKALRHTKPDIKKLEDKGVKELKAWLKENPDRQQQLDDYLEPDWQYWNRVEEQD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |