NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222689_1006211

Scaffold Ga0222689_1006211


Overview

Basic Information
Taxon OID3300023231 Open in IMG/M
Scaffold IDGa0222689_1006211 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1231
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1757
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005530Metagenome / Metatranscriptome397Y
F099404Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0222689_10062111F099404N/AEFFDLDQKKILISVLKDKLNISYAKLGKELNLSWFPVYKSCQIAKEKYPKIIDQIIKTIK
Ga0222689_10062113F005530N/AMDIITKIDPDYVSETHDVGATSAQSSAIVTGSGRVRICTTTHAHIKFGANPTATEEDVMLPADHVEIFAFKSGDKVAFIHHGGGAGEINITAVD

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