NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222689_1012221

Scaffold Ga0222689_1012221


Overview

Basic Information
Taxon OID3300023231 Open in IMG/M
Scaffold IDGa0222689_1012221 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1231
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1190
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042665Metagenome157N
F043706Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0222689_10122211F043706N/AILSTALLVNLLFMALDTGQPSIWVLILCAVAIIFAGGAENRGSGL
Ga0222689_10122213F042665GGAGMTSPKLSFATLILLSSVVTVVVTLGVMPLLALTGSVAGLFFAPAAGMAAGYSAARWLGGYIDDK

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