NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222634_1009389

Scaffold Ga0222634_1009389


Overview

Basic Information
Taxon OID3300023235 Open in IMG/M
Scaffold IDGa0222634_1009389 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1981
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019232Metagenome231Y
F023481Metagenome210Y
F044194Metagenome155N

Sequences

Protein IDFamilyRBSSequence
Ga0222634_10093891F044194AGGAGMAEQTDAHDFVQSRNKAMQFDREKRQKKIKDSLELHQDTQNTIKGMVDKLTSLNKSADEVELEIKKVIGNFFSQPTVK
Ga0222634_10093892F019232GAGMTELSFILGCFVIVLIGVYLMKANQLFIDEQNRKYIKPINKINPKVKTK
Ga0222634_10093893F023481GAGGMDNNKTSIETELKKLNSNFNTLNKIMSNFLVLALDSSTFKKKTNDEIKKIMPQINETLKSIHENIYD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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