NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222675_1020436

Scaffold Ga0222675_1020436


Overview

Basic Information
Taxon OID3300023238 Open in IMG/M
Scaffold IDGa0222675_1020436 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #868
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1086
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032551Metagenome179Y
F068498Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0222675_10204362F032551N/AMPYTNCLRLSTIKYLDLLDDVPYKIIKIMINEDDEDNDDETYNVEITDLECDRVCYCKTQFKLTLPVNISQGTLPLYVDKTFTTVIEYNTSSGIASTILDLHY
Ga0222675_10204363F068498N/AIKKECVTNCQYFYDNFKANCPLNTIKVKAVIGISLNSDRTIIYEGHVVVEVDEKFIFEPSYEVYSTDNIEYFDNIKQFMNKYKLPNKNDMKDIIKEFIDFTKIADTINNGGLHITDNEYYNNQADYVEEKIKPFL
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