Scaffold Ga0222675_1027893

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222675_1027893

Scaffold Ga0222675_1027893

Overview

Basic Information
Taxon OID	3300023238 Open in IMG/M
Scaffold ID	Ga0222675_1027893 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #868
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	886
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)		Depth (m)	12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006241	Metagenome	378	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222675_10278932	F006241	N/A	QGYKAGNERFYGYANGKGIGKKGKAVLPDVMSKNARFYGSQAGPTKISLSDPTKPYKTMGTDKFKYPSDHPLKGKEIKSDYHTTAQESPARETMGPGTFKNIPEGDPRLYFDAYAIKVVPLMRNTQKTYKSQGGLVVDMFKPIRYN

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