NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224529_1029391

Scaffold Ga0224529_1029391


Overview

Basic Information
Taxon OID3300023247 Open in IMG/M
Scaffold IDGa0224529_1029391 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1102
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006748Metagenome / Metatranscriptome365Y
F106160Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0224529_10293911F106160GGAMNISDTAPVAPGKARWTMPSISLSAQARTAILFACSAAIGGAGWSGDPALNYFALLFPFVYLHSR
Ga0224529_10293913F006748N/AFFGESAIVAKTFQKGDNIHVTGQLIRREPRPRADGEIAAREAGTVYEIHVIRAFRIAGSSKSETAAIHQNEIRRTNDARQIPAFLQESIHDWPV

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