NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224547_1000638

Scaffold Ga0224547_1000638


Overview

Basic Information
Taxon OID3300023255 Open in IMG/M
Scaffold IDGa0224547_1000638 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4584
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012097Metagenome / Metatranscriptome283Y
F026963Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0224547_10006381F026963AGGAMSSGTLTWNRDNNPLWRGAWLLLRPLHFGLAFPSLLYVAAMTVFLFRPPDLFSFYADRIA
Ga0224547_10006383F012097AGGTGGVNSLREVIVENPTIAEPETVTPIGVRSQRETLSPMALLHEEQIHALIQQLFFGRETTPVRHVGFSTMETTTEIATLCFEIATALAQEDRYDVGLIDAQPDAVSLQTQLGLPSPNRAEGTWPIAPRLWMVPRQSWLPDASGTRITDQDLSRLRERTTEFDFSILCCAPVSWITTSIGQACDGLVLVLTANKTRRLVATQIKDQLAKAQVPLLGTVLAERRFPVPQGLYRSL
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