NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222670_1016273

Scaffold Ga0222670_1016273


Overview

Basic Information
Taxon OID3300023294 Open in IMG/M
Scaffold IDGa0222670_1016273 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #732
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1455
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → unclassified Pedobacter → Pedobacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020853Metagenome221Y
F061579Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0222670_10162731F020853N/AMLSNHDIDELITKMNIPNFKGCYYKDKLKKIQPNSSYIINLNSELDESGKRNTGSHWTCLVTDDMCRAIYFDSYGENAPNEIR
Ga0222670_10162733F061579N/AKKMDKGKGVVIKMGSNEIQMNKMEGTGLFAGSGNESGKISRIKKANKWRDFSVDTAKQGIDVAKYGYDKYKEATNPVQSKLKKMFGFGDMEEDVEGGKISMSDIKKSYNKNVKNTKLGKAIRETAEKGLGEVYDKGVVKIGNTKHFSGIADVLKKGKVKNVSKLTQMSGLGLRLQGEGLTMGKGLTMGGKCCGCGMMNDKFLFQNQSL
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