NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222664_1006984

Scaffold Ga0222664_1006984


Overview

Basic Information
Taxon OID3300023296 Open in IMG/M
Scaffold IDGa0222664_1006984 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #604
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2797
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F096209Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0222664_10069842F000379AGGAGMYNKIDYDNKHGMMVGYIDGSQNVSAVQTGWDMTPEALSKLLLDKYPTKADAMQVVDSPLLVPVFKKDDYCYVDEFGDVIESNLSWNKEVMRKDVGHLFLFMKGTWQYSDNGIDWTPAKEEFVDTSGTAFTNIREALEMEKA
Ga0222664_10069844F096209N/AMTVAIQTKSVQEIFEEMTESYSLGEYLDGHTNYGEEALMAPDKFADRFQHICFGFGYRESEIIPQKHEIKEWCQEHLDKLESRFG
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Institute for Fundamental Biomedical Research
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