Scaffold Ga0222640_1040531

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222640_1040531

Scaffold Ga0222640_1040531

Overview

Basic Information
Taxon OID	3300023297 Open in IMG/M
Scaffold ID	Ga0222640_1040531 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #187
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1044
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)		Depth (m)	19
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065403	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222640_10405313	F065403	AGGAGG	MANISKPVFGAATMPFPDSAVITPVWVSADVTTLGGKTRRDVMARKYSYTFKWQYMKVSDYTNLETVVNALAPATFTYGKWTQSASGISCLGSLSVRKLEHGA

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