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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023300 Open in IMG/M |
| Scaffold ID | Ga0256702_10801594 Open in IMG/M |
| Source Dataset Name | Food waste microbial community from Durham, Ontario, Canada. Combined Assembly of Gp0238881, Gp0242100 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Toronto |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 986 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Pediococcus → Pediococcus pentosaceus | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Durham, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 44.1763 | Long. (o) | -80.8185 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007510 | Metagenome / Metatranscriptome | 349 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0256702_108015943 | F007510 | AGGCGG | MAPHSSTLVENPMDGGAWWAALHGVTKSWTRLSDFTFTFHFHALEKEMATHSSVLAWRIPGAGEPGGLPSMGSHRVGHY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |