NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256702_11710624

Scaffold Ga0256702_11710624


Overview

Basic Information
Taxon OID3300023300 Open in IMG/M
Scaffold IDGa0256702_11710624 Open in IMG/M
Source Dataset NameFood waste microbial community from Durham, Ontario, Canada. Combined Assembly of Gp0238881, Gp0242100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)977
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location NameDurham, Ontario, Canada
CoordinatesLat. (o)44.1763Long. (o)-80.8185Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039980Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0256702_117106242F039980AGAAGLQEEKRALVASRDKLYRDSSNSLTILERSHRFTMEELDNHRCKLQESTDDVIRLRQLISAKDAAIKELRASKKSIAQELETAQLAVKVAEETSVTLRAQRDRAMDKAIRAGRILMRRPGVVVPDDIRADVNAAPDSSSHPSSSVAPEKDIAK
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