NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209414_1003608

Scaffold Ga0209414_1003608


Overview

Basic Information
Taxon OID3300023301 Open in IMG/M
Scaffold IDGa0209414_1003608 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6745
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F001731Metagenome644Y
F003182Metagenome / Metatranscriptome502Y
F032155Metagenome / Metatranscriptome180Y
F098193Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209414_100360813F000403AGGAGMSDYIEVINPRTKICTLLQNGEPVAVYKMEQCDKCSSLSRLDEFGYQKGYGNNDRIIWFCGGCR
Ga0209414_100360815F003182AGGAGMHILLFDCSRCKKAFGKASQKHGLTKGNELTKNEWFSQCFGCQAFGIKIVDEARIKELSY
Ga0209414_10036082F001731GGTGGMSIFNPVWRVTINGVQYQTVILANLTITSGRTNIYEQANAGYINLEIINLDQALISIEINNSITVELQDSTSTFVPIFGGSIVDIGVSVAEVGSVGFAQRVSIIALGALARLPKALTDGVLTQDFDGDQIESILREVLFGSWQEVPGALTWATYDPATQWQTAENSGLGQIDQPGNYELTARSSDVTDVYSLVSALATSGLGYIYEDAIGRISYADSTHRTSYLAANGYVDLSANHAIANGLKIQSRSGDVRNTITLNYGSSSQVSATDSASVGVYGQLAQIFQTTIVGEVDAQDQANFYLDLRAYPRFNFNDIVYELTNPELDNGDRDSLINVFMGMPVNVADLPLNMNSGDYLGFVEGWTFKARYNQVSVSLNLSPISFSLQAMRWNDVPITEQWSTINPTLDWINATIVA
Ga0209414_10036084F098193GGAGMIKPIVRIHNSQTDEIIDREMNAEEFAQYEENQAAELLRQAEAEASATQKAALLARLGITADEAKLLIG
Ga0209414_10036088F032155N/AMSVNEWTAVGGLALAMLAAIYSSMRFIIRSVMRELAPNSGSSIKDQVTRIEARLDYLYTQLIDKNQG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.