Basic Information | |
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Taxon OID | 3300023301 Open in IMG/M |
Scaffold ID | Ga0209414_1003608 Open in IMG/M |
Source Dataset Name | Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6745 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (68.75%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Vida, Antarctica | |||||||
Coordinates | Lat. (o) | -77.38861 | Long. (o) | 161.931111 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F001731 | Metagenome | 644 | Y |
F003182 | Metagenome / Metatranscriptome | 502 | Y |
F032155 | Metagenome / Metatranscriptome | 180 | Y |
F098193 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209414_100360813 | F000403 | AGGAG | MSDYIEVINPRTKICTLLQNGEPVAVYKMEQCDKCSSLSRLDEFGYQKGYGNNDRIIWFCGGCR |
Ga0209414_100360815 | F003182 | AGGAG | MHILLFDCSRCKKAFGKASQKHGLTKGNELTKNEWFSQCFGCQAFGIKIVDEARIKELSY |
Ga0209414_10036082 | F001731 | GGTGG | MSIFNPVWRVTINGVQYQTVILANLTITSGRTNIYEQANAGYINLEIINLDQALISIEINNSITVELQDSTSTFVPIFGGSIVDIGVSVAEVGSVGFAQRVSIIALGALARLPKALTDGVLTQDFDGDQIESILREVLFGSWQEVPGALTWATYDPATQWQTAENSGLGQIDQPGNYELTARSSDVTDVYSLVSALATSGLGYIYEDAIGRISYADSTHRTSYLAANGYVDLSANHAIANGLKIQSRSGDVRNTITLNYGSSSQVSATDSASVGVYGQLAQIFQTTIVGEVDAQDQANFYLDLRAYPRFNFNDIVYELTNPELDNGDRDSLINVFMGMPVNVADLPLNMNSGDYLGFVEGWTFKARYNQVSVSLNLSPISFSLQAMRWNDVPITEQWSTINPTLDWINATIVA |
Ga0209414_10036084 | F098193 | GGAG | MIKPIVRIHNSQTDEIIDREMNAEEFAQYEENQAAELLRQAEAEASATQKAALLARLGITADEAKLLIG |
Ga0209414_10036088 | F032155 | N/A | MSVNEWTAVGGLALAMLAAIYSSMRFIIRSVMRELAPNSGSSIKDQVTRIEARLDYLYTQLIDKNQG |
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