NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209414_1021545

Scaffold Ga0209414_1021545


Overview

Basic Information
Taxon OID3300023301 Open in IMG/M
Scaffold IDGa0209414_1021545 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2121
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002402Metagenome563Y
F014810Metagenome260Y
F094668Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209414_10215452F094668GGAMAVYANVDSDFTVASTSGGDASFTVTLLAGGSLVGPYKNITGLTGNILCFKSDEL
Ga0209414_10215454F002402N/AMYYKGTKTKCEAYNTKVTLGENYQGSTTSWANVTSNQNGQGFAILKHENYKSEMTLIDKIPNSWYNNLEL
Ga0209414_10215455F014810N/AMSVLSDNFGIILSSTLGALGTLFGFLKGKKSRESNANIEIGKAYELMARQNNAFIITMTEKIEKQTTKIEHLEFEVIGLRNENKLLLTELKKYRKK
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