NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209414_1023915

Scaffold Ga0209414_1023915


Overview

Basic Information
Taxon OID3300023301 Open in IMG/M
Scaffold IDGa0209414_1023915 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1975
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002703Metagenome536Y
F031312Metagenome183Y
F048679Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209414_10239151F031312N/ALARKLTVHDVQAMRLNVHGRTDKQQAKASGVSESMVYKIRKGERWGVVR
Ga0209414_10239153F002703GAGGMSTASLADKLAHAKRESKSLKAQLEASRTAYDELLAAFDKSVYLPDPVGRRTIFKIARDKNRG
Ga0209414_10239155F048679AGGMRLKVYLLLALAHYCGVQQGALQKASGLGANTLSVWKTNNRHPTAERFYMAQAALIDLAGLPVEYKDLEIDAVARIVIK
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