NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209414_1026415

Scaffold Ga0209414_1026415


Overview

Basic Information
Taxon OID3300023301 Open in IMG/M
Scaffold IDGa0209414_1026415 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1842
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017453Metagenome240Y
F023806Metagenome / Metatranscriptome208Y
F098193Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209414_10264151F017453N/AMSRLALTPTNVPSSATDISTPTLRAGDLYYNTTQGLMAYSGSAWAAVGTSSVLTELDGGVFDGIAPYQGGNPTTTSTQTVNGGTS
Ga0209414_10264153F098193GGAGMTNPLITIHNSQTDEIVTREMNAAEFKQYEAEQAANVVKQAAAQVIADATATQKAALLARLGITADEAKLLIG
Ga0209414_10264154F023806N/AMIYPQGTSAALIAVALAEVGTVETGNNLTKYGKHGR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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