Scaffold Ga0209414_1037494

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209414_1037494

Scaffold Ga0209414_1037494

Overview

Basic Information
Taxon OID	3300023301 Open in IMG/M
Scaffold ID	Ga0209414_1037494 Open in IMG/M
Source Dataset Name	Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1433
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Sulfitobacter → Sulfitobacter pseudonitzschiae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location Name	Lake Vida, Antarctica
Coordinates	Lat. (^o)	-77.38861	Long. (^o)	161.931111	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025663	Metagenome	200	Y
F054612	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209414_10374941	F025663	AGGA	MDCFDSVSAAEAGAWLHLTNLRTDAPAYVTGKDGTSDLSKPMRINLIGMDASASKAKARKRATDILKRRGGKMDFAKMSPAQIGAVIDEGQEGIVQAAVDQTIGWENLSLDGKPVEFSEEAAFAIYRKYPSILDEVTEFLKDRANFFAQA
Ga0209414_10374942	F054612	GGA	LQRANEEPDFPELPFRAYLAEWLMDVGPVMQGGMGSVALSHLEIQAWAANIGLRFDGNEAEWLQKMSGVYASELFESNGKNTPQPFRE

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