NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209414_1079089

Scaffold Ga0209414_1079089


Overview

Basic Information
Taxon OID3300023301 Open in IMG/M
Scaffold IDGa0209414_1079089 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)828
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Skeletonema virus LDF-2015a(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015962Metagenome250N
F059683Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0209414_10790891F059683N/AVGCVALQQTTATALAIAEMTGHRDRTPFEMSQALHFYRNALEIITAAAKATEVEAEARAKRGERLPGWGLLPRLGVTRVKASPAAIKALTGKDATKIVPMNVGDLKLAGLTEAQLSIITERPTIGHKLATLDQDTLTRQLNRSIK
Ga0209414_10790892F015962AGGAGMSRHTEYGNSPVGRLISGDPWTKQTTDQNNRPIPEDKQSFWFAVAIEKNAPGMNEMLGLMFKAAQAGYGQSAHIMAQINMGLAAPAFSWKIADGDEMRANPTTGAQEARWKHGKGCWIAKFSTTLPIASA
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