NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209414_1090904

Scaffold Ga0209414_1090904


Overview

Basic Information
Taxon OID3300023301 Open in IMG/M
Scaffold IDGa0209414_1090904 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)744
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009526Metagenome / Metatranscriptome316N
F009746Metagenome / Metatranscriptome313N

Sequences

Protein IDFamilyRBSSequence
Ga0209414_10909041F009746N/AVYAFPNENITPPAIVLVPGSPYITVSAIGGARLNVRFDITCIVGAADNRAALANIEALILSVTDLLANTNALLGGWNQPTVQTIGNSEMLISQISIELVTTN
Ga0209414_10909042F009526AGGMTAVYITGRSLTLTINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVELFLDDTASAGIISALWDAALAAPDTALAFTFDVNGDIFAGNVFPVFPTVGGGATDVLTTSLSFVVNDGTVTRS
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