NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222710_1009786

Scaffold Ga0222710_1009786


Overview

Basic Information
Taxon OID3300023429 Open in IMG/M
Scaffold IDGa0222710_1009786 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1696
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1803
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014668Metagenome261Y
F061579Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0222710_10097862F061579N/AMNITLDLSKGQLSKLRNGHGIRITPTMLGSGVDLIIDPMTYHNMAKKMDKGKGVVIKMGSNEIQMNKMEGTGLFAGSGNESGKISRVKKAGKWRDFSNDTARMGIDTAAYGYKEYQKAKNPIGSKIKSWFGGGDMEEDVEGGKISMSDIKKSYNKNVKNTQLGKAIRETAEKGLGDIYDKGTEMIGNTRHLNGVADLLKKSKKGNVSKLVGMSGLGLRLQGEGVMKDARFRKPIHLGEGLTMGGKCCGCGMMNDKFLFQNQSL
Ga0222710_10097863F014668N/AIFWNNSVVTATHDGTDWSAQSSQYRAYNGTLPLMLNNFTDGFAGSTAGTLRASVYVGDTCHDSTQKTVTNNGLSTGGVGKQVELWVPAYQMLPDVEMSYAQNHLRDISYFDYYQFSLKNIGSGESFNHLVSNGISNLKAVLIVPLLHSLNNNVNAFDDGLPQLMGHINNFNVLVGGSNVLHQDSRYTYQQFNNEFFHEFGVNGNQSSGLGSSLIDFKGWLKKPYYYVNCSRVPMEQQKAYRSLQIKGTNSSSLAMDYVIFALYEKSFKLDVISGSIEKLD
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