NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256747_1011427

Scaffold Ga0256747_1011427


Overview

Basic Information
Taxon OID3300023444 Open in IMG/M
Scaffold IDGa0256747_1011427 Open in IMG/M
Source Dataset NameHydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 675-SC9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Delaware
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4917
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina cetonica(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Source Dataset Sampling Location
Location NameUSA: Loihi Seamount, Hawaii
CoordinatesLat. (o)18.906379Long. (o)-155.256927Alt. (m)Depth (m)1299.98
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059103Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0256747_10114272F059103GGAMSSSEGCDFVLRLGPLDAATAAWILDFCGHLQQGIWRAYGDEIEAHWAATEPDQPIYGPLSPTPPSKKR
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