Scaffold Ga0256747_1258382

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256747_1258382

Scaffold Ga0256747_1258382

Overview

Basic Information
Taxon OID	3300023444 Open in IMG/M
Scaffold ID	Ga0256747_1258382 Open in IMG/M
Source Dataset Name	Hydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 675-SC9
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Delaware
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	800
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Source Dataset Sampling Location
Location Name	USA: Loihi Seamount, Hawaii
Coordinates	Lat. (^o)	18.906379	Long. (^o)	-155.256927	Alt. (m)		Depth (m)	1299.98
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019664	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256747_12583822	F019664	N/A	VKETDDGKTIDGQDAGAVPAASTKHEVSYEGIFKFAKAMNTYYYTPDEWSRSIGWGTVPDERNSLLGAKQDRLTDENLQEDLDTKT

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