NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257020_146715

Scaffold Ga0257020_146715


Overview

Basic Information
Taxon OID3300023445 Open in IMG/M
Scaffold IDGa0257020_146715 Open in IMG/M
Source Dataset NameMarine microbial mat from Loihi Seamount, Hawaii, USA - Marker 34 Individual Assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterWestern Washington University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)807
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location
Location NameLoihi Seamount, Hawaii, USA
CoordinatesLat. (o)18.903Long. (o)-155.257Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015350Metagenome255Y
F099450Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0257020_1467152F015350AGGMKIYKWLIIIVVAILVGWQYDAFQKNLHEVEIRIKKFESVDLFNILEQISLAHIESVDTVDILNKKQMELQALEEEIKEKFTIQERELRAQVKTIETKLQKLRSELHDGLTKIERNVSTIDSVVDEKFKTLWMMINNK
Ga0257020_1467153F099450N/ASSETIWAAIVLTWNPVVRTIDKEFSTEVACWNYYENGVGESKFGTQHLDHQGNPPTKDFHFGKMDHREYPIRTYRGINDEQGQVWLTCDIKGRYEDL
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