NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257020_150600

Scaffold Ga0257020_150600


Overview

Basic Information
Taxon OID3300023445 Open in IMG/M
Scaffold IDGa0257020_150600 Open in IMG/M
Source Dataset NameMarine microbial mat from Loihi Seamount, Hawaii, USA - Marker 34 Individual Assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterWestern Washington University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)768
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location
Location NameLoihi Seamount, Hawaii, USA
CoordinatesLat. (o)18.903Long. (o)-155.257Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018553Metagenome / Metatranscriptome234Y
F022673Metagenome213Y
F072444Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0257020_1506002F018553AGGMLCIPRLRIAILNEEIALWENRLRDNPDDIPYLGYIRTTLKGRVKELEENERLDQEKDNGTKC
Ga0257020_1506004F072444AGAAGMMPERENNAFWEIAEIIDREMSILRKMRPVGPKEKALLKKMMDDKKKEYEKRTNSQP
Ga0257020_1506005F022673N/AMKKEQIVSPRVEIAEKIHEELLVSLELERKLLQKELTVQETMSERVEVRKDLQKCERKIKELTEQLQKENDRSKVT
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