NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257022_1031046

Scaffold Ga0257022_1031046


Overview

Basic Information
Taxon OID3300023481 Open in IMG/M
Scaffold IDGa0257022_1031046 Open in IMG/M
Source Dataset NameMarine microbial mat from Loihi Seamount, Hawaii, USA - Ku'kulu Base Individual Assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterWestern Washington University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)968
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location
Location NameLoihi Seamount, Hawaii, USA
CoordinatesLat. (o)18.903Long. (o)-155.257Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014628Metagenome261Y
F034348Metagenome / Metatranscriptome175Y
F068939Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0257022_10310461F014628GAGMKLSKKEIESKFPPIINGTYKKDMPSKDIGYQKWEVRKTYEVEITYEIVAKTKEVADELLERKETPYEEIDEYGDTSRETITSKFTNDLSGDEPTTWKKIEECVPSEDTDSDNDFKPFLNYDDPKWSKD
Ga0257022_10310462F034348AGGAGGMEQKQIAKAPMSVRVTEKTMPLTKWFAEQYYQTHALMSKDPRYKSLPPYNQTSCIATVMIATNGALDSDRAKKRADKLIEISNRDQVKTA
Ga0257022_10310463F068939GGAGGMKQYEKYADTALSIVTYIPRLCIGVYNAVERHMPATLECNYEVKKKGYDIVRKKEAKNGTEANS
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