Scaffold Ga0257052

Basic Information
Taxon OID	3300023499 Open in IMG/M
Scaffold ID	Ga0257052_100765 Open in IMG/M
Source Dataset Name	Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_69C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, Irvine
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023499 Open in IMG/M

Scaffold ID

Ga0257052_100765 Open in IMG/M

Source Dataset Name

Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_69C

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of California, Irvine

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29465
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (95.65%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

29465

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (95.65%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Source Dataset Sampling Location
Location Name	USA: Northridge, California
Coordinates	Lat. (^o)	34.2381	Long. (^o)	-118.5301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Northridge, California

Coordinates

Lat. (^o)

34.2381

Long. (^o)

-118.5301

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F045105	Metagenome	153	N
F075480	Metagenome	119	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0257052_10076522	F075480	AGGAG	MNKTKQEKWQRAYGDTPDSFRQRVAASLPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTQTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPENGQLFASAVISADESVQLVAMEADMEHEVRLTTPVDAKLDPSGISWAEWAEQNGKTLVPIGMEAAPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSAGFQVDLSEADVSHLKSCEVQLESRVGVFGKDGKATQWQKEILTATITFK
Ga0257052_1007653	F045105	AGGAGG	MSDKLKRVLDTNLAGLHVTDAQVNAVLRRVSQDEQRPRVIRWQAIAAVLLVLVLGAGVLLQTGILSDDSPQLTADVTRQGDFLTAAQVKKLLASAADLQFSVDEEAISALMTQVEKDGGCSLSTLLEILCPVGSSLGQWDIRAQVALSQTLERIGYQGILPGMTREPLSTEITAQDALARAVAYIRTNDDPQADFTNLDFYRVGIRFLSGVYDGTCEGAYYCANFDALDAFGTTYEVAVNAENGSICRMRRERGAGSNHTADEVTRGFRRIFGYDMRTWTPMQLRVYILALSRADRSSMQTVHELFLSVGRDGFPDVPVEALTREEAIDAALAIQGGSSSDVLAPEYLAGASGDFWKIAIRQPNAPSGQSIVYLELNGLTGTLLTTTYSGNLYGLPQEFFPSQLLSTLDRTDFSHGVPAVDAETAQSAASAAIERQYQRNMAEEGYTCFIENDFEDTAGGFSYYTGGGVVIFTKDAQNTSQGDIYWAALNWYGEVLDVGWNRNPLDAARFTLLMQGYLPPIYQRETVQQLQALLTGSQTDEAGLRQMETDGTLPLFNALLALEVVPDASTKSTADDVTAAALKSLNAHLCYENSSFLVYREDGELIWHFWLSTDMGYFLMDVRDSDLSVVGSVQIPSFSALRTSILLPVRVWNTLAENLRVTIFYRDANTQPGIVYGMYANHIVQRYVDLYGANILRWDQVTLRSFQSAISISGSYVGDWSVACLCQTIYPDIPDYAISQEVAAEYAARALGDDDYSLRGGVLIDPGEGDPIWKVTLDYPDRRSFNAEVDCRTGAIRTLRQQDTRVMPFYTDYLDFPDDGEYWFRNFVLDEVIEQVRTQMTGRYGNNV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0257052_100765

Overview

Ecosystem & Geography

Associated Families

Sequences